STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce12013-oxoacyl-[acyl-carrier-protein] synthase; Specificity unclear. (365 aa)    
Predicted Functional Partners:
fabD1
Malonyl CoA-acyl carrier protein transacylase; High confidence in function and specificity.
  
 0.943
fabD2
[Acyl-carrier-protein] S-malonyltransferase; Family membership.
  
 0.943
fabD3
Malonyl CoA-acyl carrier protein transacylase; Family membership.
  
 0.943
sce6077
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.916
sce3192
Polyketide synthase; Family membership.
  
 
 0.909
sce2527
Probable Acyl-[acyl-carrier protein] desaturase; Family membership.
     
 0.902
sce0356
Thioesterase; Family membership.
     
 0.901
sce2526
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
  0.900
sce3106
Hypothetical protein predicted by Glimmer/Critica.
     
 
0.900
sce3351
Putative beta-ketoacyl synthase; Family membership; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
  0.900
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.