Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1203Uncharacterized protein conserved in bacteria. (720 aa)    
Predicted Functional Partners:
sce1202
Uncharacterized protein conserved in bacteria.
 
    0.848
sce4846
Uncharacterized protein conserved in bacteria.
 
  
 0.812
sce4987
Uncharacterized protein conserved in bacteria.
 
  
 0.806
sce9346
Uncharacterized protein conserved in bacteria.
 
  
 0.803
sce9342
Uncharacterized protein conserved in bacteria.
 
  
 0.798
sce4998
Uncharacterized protein conserved in bacteria.
 
  
 0.795
sce9340
Hemolysin-coregulated protein (uncharacterized).
 
  
 0.795
sce4997
Uncharacterized protein conserved in bacteria.
 
  
 0.794
sce9338
Hypothetical protein; Function unclear.
 
  
 0.794
sce4982
Uncharacterized protein conserved in bacteria.
 
   
 0.793
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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