Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pcpB1Pentachlorophenol 4-monooxygenase; Family membership. (478 aa)    
Predicted Functional Partners:
sce1231
Putative HTH-type transcriptional regulator betl 5'region.
 
     0.807
sce0981
Putative oxidoreductase.
  
   
 0.574
ushA
Puitative 5'-nucleotidase family protein; Family membership.
       0.553
sce2243
Hypothetical protein.
  
     0.527
sce8961
Putative oxidoreductase.
  
   
 0.490
sce5373
NAD(P)-bd_dom domain-containing protein; Unnamed protein product; Family membership.
  
    0.469
sce4501
Hypothetical protein; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
  
   
 0.462
sce3010
Putative 3-hydroxy-3-methylglutaryl-CoA reductase; Family membership; Belongs to the HMG-CoA reductase family.
   
  
 0.455
sce2779
mutT/nudix family protein.
   
  
 0.404
sce3181
Probable Hydroxymethylglutaryl-CoA synthase.
   
  
 0.403
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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