Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1243Put. Tagaturonate reductase; Family membership. (376 aa)    
Predicted Functional Partners:
sce1245
Altronate dehydratase.
 
 0.985
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
 
 0.932
yjjN
Putative alcohol dehydrogenase.
 
   
 0.741
sce1002
Putative glycosyl hydrolase; Family membership.
 
  
 0.692
sce1241
Hypothetical protein predicted by Glimmer/Critica; Specificity unclear.
 
   
 0.608
dgoT
Permease of the major facilitator superfamily,putative D-galactonate transporter; High confidence in function and specificity.
 
   
 0.581
sce6940
Put. Sugar kinase; Specificity unclear.
 
   
 0.531
sce7778
Maltose/maltodextrin transport permease homologue; Family membership.
  
  
 0.527
gnl2
Gnl2 protein; High confidence in function and specificity.
 
   
 0.500
ptsN
Nitrogen regulatory IIA protein.
  
  
 0.493
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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