STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1271Hypothetical protein. (308 aa)    
Predicted Functional Partners:
sce1270
Hypothetical protein.
 
   
 0.955
modR
Putative regulator of molybdate uptake.
   
 
 0.847
sce8899
DNA-binding protein.
   
 
 0.835
sce8700
Putative membrane protein.
  
     0.541
sce7132
Putative membrane protein.
  
    0.538
sce8866
Hypothetical protein.
 
     0.533
sce9171
Hypothetical protein.
  
     0.518
sce2046
Hypothetical protein.
  
     0.513
sce0152
Polynucleotide adenyltransferase.
 
     0.489
sce5089
Putative Protein tyrosine/serine phosphatase.
  
     0.461
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.