STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1276Hypothetical protein. (360 aa)    
Predicted Functional Partners:
sce8608
Glycosyltransferase; Specificity unclear.
 
  
 0.715
gspK
General secretion pathway protein K; Family membership.
  
     0.684
sce4278
Hypothetical protein; FOG: WD40 repeat.
  
     0.681
sce2916
Hypothetical protein predicted by Glimmer/Critica.
 
    0.679
sce1107
Hypothetical protein.
  
     0.663
sce2918
FHA domain protein.
  
    0.656
sce7172
ABC transporter, nucleotide binding/ATPase protein.
  
  
 0.655
sce0013
Hypothetical protein.
  
     0.635
sce7910
Putative esterase; Family membership.
 
     0.630
sce2921
Tetratricopeptide repeat protein.
 
  
 0.621
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.