Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1276Hypothetical protein. (360 aa)    
Predicted Functional Partners:
sce8608
Glycosyltransferase; Specificity unclear.
 
  
 0.715
gspK
General secretion pathway protein K; Family membership.
  
   
 0.690
sce4278
Hypothetical protein; FOG: WD40 repeat.
  
     0.681
sce2916
Hypothetical protein predicted by Glimmer/Critica.
 
    0.680
sce1107
Hypothetical protein.
  
     0.663
sce2918
FHA domain protein.
  
    0.661
sce7172
ABC transporter, nucleotide binding/ATPase protein.
  
  
 0.649
sce7910
Putative esterase; Family membership.
 
   
 0.637
sce0013
Hypothetical protein.
  
     0.635
gspJ
Putative general secretion pathway protein J; Specificity unclear.
 
   
 0.628
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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