Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1283Integrase-like protein; High confidence in function and specificity; Belongs to the 'phage' integrase family. (299 aa)    
Predicted Functional Partners:
sce7288
Pribosyltran domain-containing protein; Unnamed protein product; Family membership.
   
    0.608
apt
Putative Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.581
sce1259
Unnamed protein product.
  
    0.563
sce8138
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.544
sce2727
Two-component system sensor protein; Specificity unclear.
  
  
 0.462
sce2108
Putative transposase; Family membership.
 
   
 0.458
sce1284
Integrase-like protein; High confidence in function and specificity; Belongs to the 'phage' integrase family.
 
    
0.441
sce5216
Transposase, probable; Family membership.
  
   
 0.408
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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