Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1300Glycosyltransferase; Specificity unclear. (359 aa)    
Predicted Functional Partners:
sce1301
Glycosyltransferase; Specificity unclear.
 
    
0.839
topB
DNA topoisomerase III; High confidence in function and specificity.
    
 
 0.696
sce3584
Glycosyltransferase; Function unclear.
 
  
 0.589
sce1037
NDP-sugar oxidoreductase; Specificity unclear.
  
    0.569
sce7844
Putative capK; capsular polysaccharide biosynthesis protein.
 
    0.553
sce4870
NDP-sugar oxidoreductase; Specificity unclear.
  
    0.545
galE3
UDP-glucose 4-epimerase; High confidence in function and specificity.
  
    0.526
sce7377
NDP-sugar oxidoreductase; Specificity unclear.
  
    0.518
sce0882
Glycosyltransferase; Specificity unclear.
 
  
 0.498
sce1750
Putative glycosyltransferase; Family membership.
  
     0.493
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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