Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1308Terpenoid cylases/protein prenyltransferase-domain containing protein; Family membership. (652 aa)    
Predicted Functional Partners:
sce1309
Hypothetical protein.
       0.664
celG
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.587
celA
CelA protein; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.587
sce4014
Putative secreted protein.
   
 
 0.587
celB
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.587
celC
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.587
sce6662
Putative secreted protein.
   
 
 0.587
chlG
Putative Octaprenyltransferase; Family membership.
     
  0.500
sce0081
Putative membrane protein.
     
  0.500
idi
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
     
  0.500
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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