Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1323ABC transporter permease protein. (260 aa)    
Predicted Functional Partners:
sce1324
ABC transporter ATP-binding protein; Specificity unclear.
 
 0.989
sce1865
ABC transporter ATP-binding protein; High confidence in function and specificity.
 
 0.974
sce2759
ABC transporter ATP-binding protein; Specificity unclear.
 
 0.974
ssuB
Aliphatic sulfonate ABC transporter, nucleotide binding/ATPase protein; High confidence in function and specificity.
 
 0.973
ssuB-2
ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 0.967
sce1321
ABC transporter substrate-binding protein; Specificity unclear.
 
 
 0.929
ssuE
FMN reductase; High confidence in function and specificity.
 
 
  0.883
ssuA
Aliphatic sulfonate ABC transporter, substrate-binding protein; High confidence in function and specificity.
 
 0.877
astR
Sulfate ester binding protein (ABC superfamily,peri_bind).
 
 
 0.876
sce1862
Putative periplasmic substrate-binding protein.
 
 
 0.875
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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