Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1347Putative outer membrane protein. (692 aa)    
Predicted Functional Partners:
sce4140
TonB dependent receptor; Family membership.
  
     0.744
sce6823
NRPS/PKS hybrid.
  
  
 0.725
btuB
Putative outer membrane receptor for transport of vitamin B12.
  
  
 0.681
moaA1
Probable molybdenum cofactor biosynthesis protein A.
  
     0.648
fecA-2
Probable TonB-dependent receptor.
  
  
 0.606
mxcF
Isochorismatase; High confidence in function and specificity.
  
  
 0.600
moaA2
Hypothetical protein predicted by Glimmer/Critica.
  
     0.589
sce8263
tonB family protein; Family membership.
 
 
 0.557
mxcH
Probable TonB-dependent receptor; Family membership.
 
 
 0.547
aglR1
Adventurous gliding motility protein R; Family membership.
 
  
 0.510
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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