Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1348ABC-type branched-chain amino acid transport system, periplasmic component; Family membership. (459 aa)    
Predicted Functional Partners:
sce8603
Putative ABC transport protein, permease component; Family membership; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.852
livH
Branched-chain amino acid ABC transporter,permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.788
sce5581
Putative branched-chain amino acid ABC transporter, permease protein; Family membership; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.760
sce8604
Branched-chain amino acid ABC transporter, ATP-binding protein; Family membership.
  
  
 0.736
sce5580
Putative branched-chain amino acid ABC transporter, permease protein; Family membership; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.678
sce5583
Putative branched-chain amino acid transport system ATP-binding protein.
 
  
 0.572
sce8605
ABC transport protein, ATP-binding component.
  
  
 0.506
ureA
Urease, beta/gamma subunit; High confidence in function and specificity.
     
 0.439
sce7621
Hypothetical protein.
  
     0.437
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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