STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1385Transcriptional regulator, TetR family; Family membership. (191 aa)    
Predicted Functional Partners:
nodL
Galactoside O-acetyltransferase; Family membership.
 
   
 0.881
minE
Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.818
sce8385
Uncharacterized protein conserved in bacteria.
   
    0.817
sce6076
Putative sugar nucleotide epimerase; Family membership.
  
    0.700
sce6114
Hypothetical protein predicted by Glimmer/Critica.
  
    0.688
phoU
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.549
sce5038
Hypothetical protein.
   
    0.545
sce0980
Putative transcriptional regulator.
  
    0.534
lepB1
Signal peptidase I; High confidence in function and specificity; Belongs to the peptidase S26 family.
   
    0.530
lepB2
Signal peptidase I; Specificity unclear; Belongs to the peptidase S26 family.
   
    0.530
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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