Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nodLGalactoside O-acetyltransferase; Family membership. (195 aa)    
Predicted Functional Partners:
sce1385
Transcriptional regulator, TetR family; Family membership.
 
   
 0.881
sce1138
Acetyltransferase; Family membership.
    
 0.517
yfbE
Putative enzyme; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.514
sce6680
Nucleotide sugar aminotransferase; Specificity unclear; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.514
sce7344
NDP-sugar aminotransferase; Specificity unclear; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.514
cobB
Transcriptional regulatory protein, Sir2 family; Belongs to the sirtuin family. Class III subfamily.
    
 0.513
wzc2
Protein tyrosine kinase.
  
  
 0.488
sce0882
Glycosyltransferase; Specificity unclear.
  
  
 0.453
sce3584
Glycosyltransferase; Function unclear.
  
  
 0.453
sce6684
Glycosyltransferase; Specificity unclear.
  
  
 0.453
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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