STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1391Hypothetical protein predicted by Glimmer/Critica. (265 aa)    
Predicted Functional Partners:
sce1390
Hypothetical protein predicted by Glimmer/Critica.
       0.781
sce1392
Uncharacterized membrane protein.
       0.781
sce1393
Hypothetical protein; Function unclear.
       0.781
sce1388
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
       0.773
sce1389
Putative regulatory protein; Family membership.
       0.773
sce1394
Putative membrane protein; Family membership.
       0.737
abgT
Putative integral membrane efflux protein.
       0.477
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.