Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1393Hypothetical protein; Function unclear. (286 aa)    
Predicted Functional Partners:
sce1392
Uncharacterized membrane protein.
    0.976
sce1388
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
    0.969
sce1394
Putative membrane protein; Family membership.
 
     0.840
sce1389
Putative regulatory protein; Family membership.
 
    0.817
sce1390
Hypothetical protein predicted by Glimmer/Critica.
       0.781
sce1391
Hypothetical protein predicted by Glimmer/Critica.
       0.781
sce4442
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
    0.724
sce0130
RDD domain-containing protein; Unnamed protein product; Family membership.
  
     0.543
abgT
Putative integral membrane efflux protein.
       0.477
sce9315
Conserved hypothetical protein with a vWF type A domain.
  
     0.430
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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