Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1399Hypothetical protein. (809 aa)    
Predicted Functional Partners:
sce1396
CheA-like histidine kinase; Family membership.
       0.773
sce1397
Response regulator; Family membership.
       0.773
sce1398
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce1400
Putative membrane protein.
       0.773
sce4140
TonB dependent receptor; Family membership.
  
     0.770
sce6823
NRPS/PKS hybrid.
  
  
 0.725
tonB2
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.717
tonB1
Putative TonB protein; Specificity unclear.
  
 
 0.659
aglR1
Adventurous gliding motility protein R; Family membership.
 
  
 0.612
mxcF
Isochorismatase; High confidence in function and specificity.
  
  
 0.600
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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