Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
sce1411Putative Dehydrogenase; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (247 aa)    
Predicted Functional Partners:
sce1410
Putative araC-like transcription regulator; Family membership.
 
     0.883
fabG6
3-oxoacyl-[acyl-carrier-protein] reductase; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.656
sce4948
Putative Oxidoreductase; Family membership.
 
     0.551
sce1409
Hypothetical protein.
       0.445
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
 
 0.421
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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