STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otsBTrehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (268 aa)    
Predicted Functional Partners:
sce3268
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Family membership.
 
 
 0.994
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); High confidence in function and specificity.
 
 
0.983
treS
Trehalose synthase; High confidence in function and specificity.
 
 
 0.959
treZ
Malto-oligosyltrehalose trehalohydrolase; High confidence in function and specificity.
 
 0.945
sce7170
Alpha-amylase-family protein; Family membership.
 
 0.945
sodC
Superoxide dismutase, secreted; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
  
 0.784
sce6733
Glycosyl hydrolase; Family membership.
 
   
 0.782
sce8050
Glycosyl hydrolase; Family membership.
 
   
 0.777
fba2
Fructose-bisphosphate aldolase; Family membership.
   
    0.776
sce1562
Glycosyl hydrolase; Family membership.
 
   
 0.775
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.