STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1438Small subunit of cytochrome c nitrite reductase; Family membership. (179 aa)    
Predicted Functional Partners:
nrfA
Nitrite reductase (cytochrome; Family membership; Belongs to the cytochrome c-552 family.
 
 0.999
napB
Diheme cytochrome C precursor; Family membership.
  
 
 0.983
napA
Nitrate reductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 0.973
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
    
 0.931
gdhA1
Glutamate dehydrogenase; Family membership; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.920
gdhA2
Glutamate dehydrogenase; Family membership; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.920
gdhA3
Glutamate dehydrogenase (NADP(+)); High confidence in function and specificity; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.920
glnA1
GlnA1 protein; Family membership; Belongs to the glutamine synthetase family.
     
 0.910
glnA2
Glutamate--ammonia ligase; High confidence in function and specificity.
     
 0.910
sce2681
High-affinity nitrate transporter, putative.
     
 0.908
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.