Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sce1440Putative terpene cyclase; Family membership. (771 aa)    
Predicted Functional Partners:
sce1441
Putative nucleotide-binding protein; Family membership.
 
   
 0.936
sce1442
Putative nucleotide-binding protein.
 
   
 0.885
crtE
Farnesyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
     
 0.807
ispB
Trans-octaprenyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
     
 0.807
sce4204
Geranyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
     
 0.807
uppS1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.800
uppS2
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.800
sce4642
Putative nucleotide-binding protein; High confidence in function and specificity.
 
   
 0.737
sce6114
Hypothetical protein predicted by Glimmer/Critica.
  
     0.706
sce2242
Putative hydrolase.
  
     0.665
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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