Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1442Putative nucleotide-binding protein. (466 aa)    
Predicted Functional Partners:
sce1440
Putative terpene cyclase; Family membership.
 
   
 0.885
sce1443
Hypothetical membrane channel protein.
  
    0.752
sce1445
Hypothetical protein.
 
     0.588
sce4643
Probable cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
     0.549
sce1441
Putative nucleotide-binding protein; Family membership.
 
    
0.547
sce4006
Bacterial type 3a, cellulose-binding domain; Family membership.
  
    0.547
sce2242
Putative hydrolase.
  
    0.546
rpoB
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.502
sce3210
Hypothetical WD-repeat protein all2124.
  
 
  0.486
sce3804
Putative ATP/GTP-binding protein.
  
 
   0.485
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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