Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1445Hypothetical protein. (410 aa)    
Predicted Functional Partners:
sce1440
Putative terpene cyclase; Family membership.
 
     0.636
sce1442
Putative nucleotide-binding protein.
 
     0.588
sce1441
Putative nucleotide-binding protein; Family membership.
 
     0.568
sce3010
Putative 3-hydroxy-3-methylglutaryl-CoA reductase; Family membership; Belongs to the HMG-CoA reductase family.
  
  
 0.536
sce6070
Hypothetical protein.
  
     0.497
sce5370
Fibronectin type III domain protein.
  
     0.493
ytbE
Prostaglandin-E; High confidence in function and specificity.
  
     0.466
sce5384
Membrane protease subunits, stomatin/prohibitin homologs.
  
 
   0.462
sce1394
Putative membrane protein; Family membership.
  
     0.443
sce5882
Hypothetical protein.
  
     0.440
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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