STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1454Put. Galactose mutarotase; Family membership. (293 aa)    
Predicted Functional Partners:
galK
Galactokinase; High confidence in function and specificity; Belongs to the GHMP kinase family. GalK subfamily.
  
 0.867
sce1455
Hypothetical protein predicted by Glimmer/Critica.
       0.737
sce7621
Hypothetical protein.
  
     0.601
dacB
Probable D-alanyl-D-alanine carboxypeptidase; High confidence in function and specificity.
  
  
 0.550
sce1453
Concanavalin A-like lectin/glucanase-domain containing protein; Family membership.
       0.498
sce1011
Hypothetical protein.
  
     0.471
sce6713
DNA integration/recombination/invertion protein; High confidence in function and specificity.
  
     0.438
sce2350
Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains.
  
     0.432
sce3893
Hypothetical protein.
  
     0.416
sce5331
Delta(12)-fatty acid dehydrogenase.
  
     0.406
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.