STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1489Specificity unclear. (260 aa)    
Predicted Functional Partners:
sce3040
Hypothetical protein.
 
   0.976
sce6752
Hypothetical protein.
 
 
   0.815
sce1485
Putative Beta-xylosidase; Family membership; Belongs to the glycosyl hydrolase 43 family.
 
     0.810
sce4079
Hypothetical protein predicted by Glimmer/Critica.
 
   
 0.785
sce6693
O-Glycosyl hydrolase; Specificity unclear.
  
 
   0.781
sce1002
Putative glycosyl hydrolase; Family membership.
 
     0.778
aguA
Xylan alpha-1,2-glucuronidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 67 family.
 
     0.771
sce3318
Put. Endoglucanase; Family membership.
  
 
   0.764
xynB3
Endo-1,4-beta-xylanase; Family membership.
  
 
   0.763
xynB2
Beta-xylanase.
  
 
   0.762
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.