STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1492Gliding motility protein. (196 aa)    
Predicted Functional Partners:
sce7248
Putative MglB protein.
 
 
 0.981
sce3925
Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.
  
 
 0.880
ftsY
Cell division membrane protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
  
 0.836
sce2584
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.772
sce8153
Hypothetical protein.
  
 
   0.738
pilM
Tfp pilus assembly protein, ATPase PilM.
  
   
 0.597
sce6926
Hypothetical protein.
  
     0.591
ffh
Signal recognition particle protein; High confidence in function and specificity.
   
 
 0.586
sce1491
Hypothetical protein predicted by Glimmer/Critica.
       0.574
sce6447
Hypothetical protein; FOG: TPR repeat.
  
    0.455
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.