STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mopB1Outer membrane protein. (601 aa)    
Predicted Functional Partners:
sce1706
Outer membrane protein.
  
   0.782
sce5128
Putative outer membrane protein.
  
 
   0.781
sce6431
Putative outer membrane protein.
  
 
   0.780
sce1501
Putative adenylate/guanylate cyclase.
       0.701
sce1503
Hypothetical protein.
       0.562
sce3630
WD-repeat protein.
  
   0.558
sce1504
Protein kinase; Family membership.
       0.555
sce1079
Universal stress protein family; Family membership.
   
    0.549
sce7389
Universal stress protein; Family membership.
   
    0.549
sce0648
ompA-family exported protein; Family membership.
  
     0.486
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.