Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1511Putative esterase/lipase/thioesterase. (366 aa)    
Predicted Functional Partners:
sce5172
Putative secreted protein.
  
     0.732
sce0966
Hypothetical protein.
  
     0.707
sce7736
Putative secreted protein.
  
     0.690
sce3040
Hypothetical protein.
  
     0.670
sce4005
Glycosyl hydrolases family 11 member; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.665
celG
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.657
sce4908
Putative pectate lyase; Family membership.
  
     0.649
xynD
Endo-1,4-beta-xylanase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
  
     0.642
sce9311
Hypothetical protein predicted by Glimmer/Critica.
  
     0.639
pelA
PelA protein; High confidence in function and specificity.
  
     0.637
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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