Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1516Hypothetical protein; FOG: PKD repeat. (491 aa)    
Predicted Functional Partners:
sce3669
Regulatory protein FlaEY.
  
     0.774
sce5641
Hypothetical protein.
  
     0.774
sce7893
Hypothetical protein predicted by Glimmer/Critica.
  
     0.774
sce2682
Cell surface glycoprotein (s-layer protein) related protein.
  
     0.743
sce1518
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.635
sce1517
Putative membrane protein.
       0.623
sce1519
Hypothetical protein predicted by Glimmer/Critica.
       0.623
sce4505
Hypothetical protein predicted by Glimmer/Critica.
  
     0.422
sce1429
Hypothetical protein; FOG: WD40 repeat.
  
     0.421
sce0773
Hypothetical protein.
  
     0.401
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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