Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gcdGlucose 1-dehydrogenase; Family membership. (378 aa)    
Predicted Functional Partners:
gnl1
Gnl1 protein; Family membership.
  
 
  0.900
sce3371
Hypothetical protein predicted by Glimmer/Critica.
  
 
  0.900
fabG11
Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Family membership.
   
 
  0.900
sce7442
Dehydrogenase of unknown specificity; Specificity unclear.
   
 
  0.900
gnl2
Gnl2 protein; High confidence in function and specificity.
  
 
  0.900
pgm3
Pgm3 protein; High confidence in function and specificity.
   
 0.838
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
   
 0.828
gap
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); High confidence in function and specificity; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
 
 0.826
pgi
Glucose-6-phosphate isomerase; High confidence in function and specificity; Belongs to the GPI family.
  
 0.824
pdhA
Pyruvate dehydrogenase (acetyl-transferring); High confidence in function and specificity.
  
 
 0.822
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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