Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1531Leucine-rich repeat (LRR) protein. (401 aa)    
Predicted Functional Partners:
sce1532
Hypothetical protein predicted by Glimmer/Critica.
       0.714
sce1533
Put. membrane protein.
       0.668
gst5
Gst5 protein; Glutathione S-transferase.
       0.534
sce1534
Transcriptional regulator, ArsR family; Family membership.
       0.518
sce6584
Putative secreted protein.
  
     0.511
sce1529
Uncharacterized conserved protein contains double-stranded beta-helix domain.
       0.508
sce7552
Hypothetical protein.
  
     0.464
sce7535
Kumamolisin; High confidence in function and specificity.
  
     0.423
sce0499
Probable protease.
  
     0.408
pahx
Pahx protein; Phytanoyl-CoA dioxygenase.
  
     0.404
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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