Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1577Putative beta-galactosidase. (365 aa)    
Predicted Functional Partners:
sce7647
Putative secreted protein.
 
     0.753
vanW
Vancomycin resistance gene; Family membership.
  
     0.530
sce5581
Putative branched-chain amino acid ABC transporter, permease protein; Family membership; Belongs to the binding-protein-dependent transport system permease family.
   
   0.489
sce8603
Putative ABC transport protein, permease component; Family membership; Belongs to the binding-protein-dependent transport system permease family.
   
   0.489
sce7395
Putative secreted protein.
  
     0.464
sce1578
Hypothetical protein; Predicted hydrolase of the alpha/beta superfamily.
       0.459
sce2965
Hypothetical protein predicted by Glimmer/Critica; Belongs to the peptidase M16 family.
 
     0.427
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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