Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nosNitric-oxide synthase, oxygenase subunit; Family membership. (1163 aa)    
Predicted Functional Partners:
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.924
argH
Argininosuccinate lyase; High confidence in function and specificity.
 
  
 0.916
argG
Argininosuccinate synthase; High confidence in function and specificity; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
    
 0.914
argF2
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
     
 0.903
astA
Arginine N-succinyltransferase; Family membership.
     
  0.900
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
   
 
  0.900
sce4569
Hypothetical protein.
     
  0.900
sce0338
Rubredoxin; High confidence in function and specificity.
  
 
 0.873
sce4341
Hypothetical protein; Fe-S-cluster-containing hydrogenase components 1.
  
 0.870
sce3300
Hypothetical protein; Putative phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit.
  
 
 0.856
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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