STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1597Hypothetical protein; FOG: HEAT repeat. (705 aa)    
Predicted Functional Partners:
cheW4
CheW4 protein; Family membership.
       0.805
cheR1
Chemotaxis protein methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
       0.799
sce0609
Hypothetical protein; FOG: TPR repeat.
  
 
   0.764
sce2957
Hypothetical protein; FOG: Glucan-binding domain (YG repeat).
  
     0.762
sce6447
Hypothetical protein; FOG: TPR repeat.
  
     0.757
sce8154
Hypothetical protein predicted by Glimmer/Critica.
  
     0.756
sce0252
Hypothetical protein predicted by Glimmer/Critica; Family membership.
  
     0.752
sce4535
Hypothetical protein predicted by Glimmer/Critica.
  
     0.751
sce9355
Cellulose synthase 1 operon protein C precursor.
  
 
   0.751
sce8705
Hypothetical protein predicted by Glimmer/Critica.
  
     0.749
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.