STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1607PE_PGRS family protein; Family membership. (575 aa)    
Predicted Functional Partners:
sce6730
Putative exported protease precursor.
  
     0.769
sce1608
Hypothetical protein predicted by Glimmer/Critica.
       0.762
sce7634
Hypothetical protein.
  
     0.761
sce3864
Hypothetical protein predicted by Glimmer/Critica.
  
     0.751
sce4244
Hypothetical protein; No COG number.
  
     0.746
sce2921
Tetratricopeptide repeat protein.
 
 
 0.736
sce2861
Dumpy.
  
 
   0.721
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.710
sce1566
Hypothetical protein predicted by Glimmer/Critica.
  
    0.707
sce7605
Hypothetical protein; Predicted metal-dependent membrane protease.
  
     0.703
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.