Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1613Hypothetical protein predicted by Glimmer/Critica. (339 aa)    
Predicted Functional Partners:
sce4410
Hypothetical protein.
    
 0.811
sce7717
Hypothetical protein predicted by Glimmer/Critica.
    
 0.788
guaB1
IMP dehydrogenase; Family membership.
   
 0.778
sce1612
Putative multi-domain regulatory protein.
       0.773
sce9152
Putative transport/regulator protein; Family membership.
    
 0.707
sce8819
Hypothetical protein; 5-nucleotidase/23-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
   
 0.688
pp2c12
Phosphoprotein phosphatase; High confidence in function and specificity.
    
 0.687
sce1611
Hypothetical protein predicted by Glimmer/Critica.
   
  0.684
sce1145
Hypothetical protein predicted by Glimmer/Critica.
  
 0.606
sce1760
Hypothetical protein predicted by Glimmer/Critica.
  
 0.606
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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