Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lolD-2ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (244 aa)    
Predicted Functional Partners:
sce1635
Integral membrane protein.
 
 0.988
sce1006
Hypothetical protein; ABC-type antimicrobial peptide transport system permease component.
 
 0.964
sce1005
Macrolide-specific ABC-type efflux carrier; Family membership.
 
 0.959
macB
Hypothetical protein; ABC-type antimicrobial peptide transport system permease component.
 
 0.958
sce7228
Hypothetical protein; ABC-type antimicrobial peptide transport system permease component.
 
 0.956
salY
Hypothetical protein; ABC-type antimicrobial peptide transport system permease component.
 
 0.956
lolC
Lipoprotein releasing system transmembrane protein lolC; Specificity unclear.
 
 0.943
sce1088
ABC transporter, permease protein.
 
 0.932
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 
0.906
lysS
Lysine--tRNA ligase; Family membership; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
     0.852
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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