STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1677Hypothetical protein; FOG: TPR repeat. (297 aa)    
Predicted Functional Partners:
sce7402
Hypothetical protein; FOG: TPR repeat.
  
     0.720
sce0605
Hypothetical protein; FOG: TPR repeat.
 
     0.654
sce8004
Hypothetical protein; Phycocyanin alpha-subunit phycocyanobilin lyase and related proteins.
  
     0.639
sce3608
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase; High confidence in function and specificity.
  
     0.633
sce1678
Uncharacterized protein conserved in bacteria.
  
    0.606
sce6486
Hypothetical protein; FOG: TPR repeat.
  
     0.574
sce1616
TPR domain protein.
 
     0.548
pilQ
Type 4 fimbrial biogenesis protein PilQ; Specificity unclear.
 
   
 0.522
sce3142
TPR repeat.
  
     0.511
pilI
Putative membrane protein; Function unclear.
  
    0.501
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.