Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1687Protein of unknown function DUF262. (426 aa)    
Predicted Functional Partners:
sce1686
Hypothetical protein.
 
     0.926
sce1685
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce6759
Hypothetical protein; COG: ABC-type sugar transport systems, ATPase components.
 
     0.604
sce7871
Hypothetical protein; Function unclear.
 
     0.533
sce5012
Hypothetical protein.
  
     0.499
sce2800
Hypothetical protein predicted by Glimmer/Critica.
 
     0.481
sce8542
Hypothetical protein.
 
     0.473
sce5011
Hypothetical protein.
  
     0.466
sce1131
Predicted nucleic acid-binding protein contains PIN domain.
  
     0.463
sce5018
Hypothetical protein; Predicted ATPase.
 
     0.459
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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