Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1698Putative pterin-4-alpha-carbinolamine dehydratase; High confidence in function and specificity. (97 aa)    
Predicted Functional Partners:
phhA
Phenylalanine 4-monooxygenase; Family membership.
 
 0.993
hppD1
4-hydroxyphenylpyruvate dioxygenase; Family membership.
  
  
 0.794
hppD2
4-hydroxyphenylpyruvate dioxygenase; Family membership.
  
  
 0.794
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.718
sce1700
Hypothetical protein predicted by Glimmer/Critica.
       0.686
sce3087
Hypothetical protein.
    
   0.649
hgo
Homogentisate 1,2-dioxygenase; High confidence in function and specificity.
  
  
 0.634
sce5980
Homogentisate 1,2-dioxygenase; Family membership.
  
  
 0.634
sce1697
Hypothetical protein predicted by Glimmer/Critica.
       0.579
sce1872
Unnamed protein product; Family membership.
  
  
 0.548
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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