STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1715Integral membrane protease; Function unclear. (344 aa)    
Predicted Functional Partners:
mcrA
HNH endonuclease family protein; Family membership.
  
     0.709
sce5599
Hypothetical protein; Restriction endonuclease.
  
     0.673
sce1105
Putative exported protein.
 
  
 0.622
cdsA
Phosphatidate cytidylyltransferase; Family membership.
  
    0.593
sce7969
Hypothetical protein; Family membership.
  
  
 0.572
uppS1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.570
sce6144
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.570
uppS2
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.570
sce0395
Putative outer membrane protein.
  
  
 0.552
sce4450
Probable surface antigen.
  
  
 0.552
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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