Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1726Probable oxidoreductase. (568 aa)    
Predicted Functional Partners:
sce7830
Hypothetical protein predicted by Glimmer/Critica.
  
     0.730
sce2046
Hypothetical protein.
  
     0.720
sce0958
Hypothetical protein predicted by Glimmer/Critica.
  
     0.702
sce7132
Putative membrane protein.
  
     0.699
sce2809
Putative membrane protein.
  
     0.691
sce2775
Unnamed protein product; Hypothetical protein.
  
     0.687
sce0507
Hypothetical protein.
  
     0.665
sce8866
Hypothetical protein.
  
     0.635
sce0518
Probable lipase.
  
     0.632
sce1461
3-demethylubiquinone-9 3-methyltransferase; High confidence in function and specificity.
  
    0.616
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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