Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rubYRubY protein; High confidence in function and specificity. (142 aa)    
Predicted Functional Partners:
glpC
GlpC protein; Family membership.
 
   
 0.889
sce1755
Hypothetical protein.
 
   
 0.880
sce1752
Transcription regulator Fur family homolog; Specificity unclear; Belongs to the Fur family.
  
  
 0.745
sce6959
Alkyl hydroperoxide reductase, C subunit; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.637
sce0338
Rubredoxin; High confidence in function and specificity.
  
  
 0.564
sce0170
Probable peroxiredoxin; Family membership.
  
  
 0.550
fur
Ferric uptake regulation protein; High confidence in function and specificity; Belongs to the Fur family.
  
  
 0.513
fur-2
Regulator protein, FUR family; Family membership; Belongs to the Fur family.
  
  
 0.513
sce8342
Uncharacterized flavoprotein.
 
  
 0.492
sce7206
Regulator protein, FUR family; Family membership; Belongs to the Fur family.
  
  
 0.440
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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