Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fcbC4-hydroxybenzoyl-CoA thioesterase; Family membership. (147 aa)    
Predicted Functional Partners:
sce3190
Polyketide synthase; Family membership.
  
 
 0.821
sce4888
Probable glycolipid synthase; Family membership.
  
  
 0.796
sce1755
Hypothetical protein.
   
   0.788
sce1757
Hypothetical protein predicted by Glimmer/Critica.
   
   0.781
sce8661
Probable oxidoreductase; Family membership.
 
   
 0.735
sce3192
Polyketide synthase; Family membership.
  
 
 0.703
boxC
Enoyl-CoA hydratase/isomerase; Family membership.
 
  
 0.694
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.691
sce8261
Polyketide synthase type I; Family membership.
  
 
 0.684
sce0819
Polyketide synthase; Family membership.
  
 
 0.675
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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