STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1760Hypothetical protein predicted by Glimmer/Critica. (362 aa)    
Predicted Functional Partners:
sce3192
Polyketide synthase; Family membership.
   
 0.871
sce0819
Polyketide synthase; Family membership.
   
 0.861
sce3006
Hypothetical protein predicted by Glimmer/Critica.
    
 0.850
sce6724
Hypothetical protein predicted by Glimmer/Critica.
    
 0.850
sce7747
Putative protein phosphatase.
    
 0.850
ndhA
NADH dehydrogenase subunit 1; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
  
 0.818
petB
Cytochrome b6.
    
 0.816
sce0330
Hypothetical protein.
    
 0.813
fabG9
3-oxoacyl-[acyl-carrier-protein] reductase.
   
 0.805
sce9152
Putative transport/regulator protein; Family membership.
    
 
 0.795
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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