Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
idiIsopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (362 aa)    
Predicted Functional Partners:
sce4206
Diphosphomevalonate decarboxylase; Family membership.
 
  
 0.976
sce4204
Geranyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
 
 
 0.930
crtE
Farnesyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
  
 
 0.926
sce3010
Putative 3-hydroxy-3-methylglutaryl-CoA reductase; Family membership; Belongs to the HMG-CoA reductase family.
   
 0.881
mvk
Mvk protein; Mevalonate kinase.
 
   
 0.823
sce6394
Putative Hydroxymethylglutaryl-CoA synthase.
 
  
 0.710
sce4207
Phosphomevalonate kinase.
 
   
 0.699
sce0442
Serine-pyruvate aminotransferase; Family membership.
  
 0.613
phnW
2-aminoethylphosphonate:pyruvate aminotransferase; Family membership.
  
 0.613
argH
Argininosuccinate lyase; High confidence in function and specificity.
  
  
 0.599
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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