STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1771Keratin associated protein 5-4; Function unclear. (352 aa)    
Predicted Functional Partners:
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.774
sce6350
Vitelline membrane outer layer protein I-like Hypothetical protein.
  
     0.767
sce0136
Hypothetical protein.
  
     0.763
sce4688
Hypothetical protein.
  
     0.757
sce6345
PE_PGRS family protein; Family membership.
  
     0.754
sce8872
PE-PGRS family protein.
  
     0.742
sce6017
Hypothetical protein.
  
     0.732
sce0635
Putative secreted protein.
  
     0.731
sce2207
Slit homolog 3 protein precursor (Slit-3).
  
     0.727
sce3561
PE-PGRS family protein.
  
     0.725
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.