STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1774Hypothetical protein; FOG: TPR repeat. (256 aa)    
Predicted Functional Partners:
sce3861
Transcriptional regulator, MerR family; Family membership.
 
 
 0.780
sce3142
TPR repeat.
 
     0.769
sce5715
TPR domain protein; Family membership.
 
     0.766
sce5943
TPR domain protein; Family membership.
 
     0.745
sce2919
Tetratricopeptide repeat family protein.
 
     0.675
sce7402
Hypothetical protein; FOG: TPR repeat.
 
     0.669
sce0605
Hypothetical protein; FOG: TPR repeat.
 
   0.629
sce3608
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase; High confidence in function and specificity.
 
     0.580
sce2005
Hypothetical protein.
 
   
 0.525
sce4216
Hypothetical protein; FOG: TPR repeat.
 
     0.422
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.