Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1777Phosphoserine phosphatase; Family membership. (795 aa)    
Predicted Functional Partners:
ubiE1
Quinone methyltransferase.
 
     0.861
sce7776
Two-component hybrid histidine kinase; Family membership.
 
  
 0.846
sce1346
Hybrid histidine kinase; Family membership.
 
  
 0.834
sce4309
Hybrid sensory histidine kinase; Family membership.
 
  
 0.802
rsbR1
Positive regulator of sigma-B.
 
 
 0.743
sce1844
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.732
sce1938
Two-component response regulator; Family membership.
 
 
 0.729
sce1780
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.726
sce1778
Hypothetical protein.
       0.718
sce3710
Sensory box/GGDEF family protein.
  
  
 0.709
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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