Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1784Hypothetical protein. (312 aa)    
Predicted Functional Partners:
sce2462
Putative Zn-dependent alcohol dehydrogenases and related dehydrogenases.
 
  
  0.976
sce6192
Hypothetical protein.
  
  
 
0.916
kamD
Beta-lysine 5,6-aminomutase, alpha subunit; High confidence in function and specificity.
 
   
 0.796
kamE
Beta-lysine 5,6-aminomutase, beta subunit.
 
   
 0.795
sce6835
Hypothetical sugar oxidoreductase; Function unclear.
 
    0.753
sce1783
Transcriptional regulator, MarR family; Family membership.
       0.693
sce1525
Hypothetical protein; Predicted metal-dependent hydrolase.
  
  
 0.592
sce1310
Putative secreted protein.
  
  
 0.567
sce7017
Hypothetical protein.
  
  
 0.567
sce8783
Hypothetical protein; Predicted metal-dependent hydrolase.
  
  
 0.567
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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